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Summarise mapped and unmapped read counts from sorted BAM files

Source: R/08_summarise_bam_stats.R
summarise_bam_stats.Rd

Summarise mapped and unmapped read counts from sorted BAM files

Usage

summarise_bam_stats(bam_dir = "merged/bam")

Arguments

bam_dir

Directory containing sorted BAM files (default: "merged/bam")

Value

A data.frame with sample names, mapped and unmapped counts